PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0453s0210.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 257aa    MW: 29033.9 Da    PI: 8.9615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0453s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.6e-52141381128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg
  SapurV1A.0453s0210.1.p  14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SIIPEVDVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATG 96 
                             79****************************.89***************54...46799***************************** PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk+++++ ++++ g+kktLvfy+g+ p+g++tdW+mheyrl
  SapurV1A.0453s0210.1.p  97 IDKQIVTSkGKQVAGMKKTLVFYRGKPPHGTRTDWIMHEYRL 138
                             ****9998566779**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-609173IPR003441NAC domain
PROSITE profilePS5100557.1914173IPR003441NAC domain
PfamPF023652.9E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEKLSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASIIPEVD VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSKGKQVA GMKKTLVFYR  120
GKPPHGTRTD WIMHEYRLAS TETTACNALK NNSTQGPVVV PVENWVLCRI FLKKRGSKNE  180
EENIQAGHDD RLPKLRTTKP VFYDFMTKEK TTDLNLAPSS SFSGSSGITE EVPCNESDDH  240
EESSSCNSFP YFRRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B3e-521217815170NAC domain-containing protein 19
4dul_A3e-521217815170NAC domain-containing protein 19
1ut7_B3e-521217815170NO APICAL MERISTEM PROTEIN
1ut7_A3e-521217815170NO APICAL MERISTEM PROTEIN
1ut4_B3e-521217815170NO APICAL MERISTEM PROTEIN
1ut4_A3e-521217815170NO APICAL MERISTEM PROTEIN
3swp_D3e-521217818173NAC domain-containing protein 19
3swp_C3e-521217818173NAC domain-containing protein 19
3swp_B3e-521217818173NAC domain-containing protein 19
3swp_A3e-521217818173NAC domain-containing protein 19
3swm_D3e-521217818173NAC domain-containing protein 19
3swm_C3e-521217818173NAC domain-containing protein 19
3swm_B3e-521217818173NAC domain-containing protein 19
3swm_A3e-521217818173NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700120.0KP770012.1 Populus tomentosa apical meristem (NAM) family protein (Potri.001G061200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036132.11e-176PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9FY931e-110NAC83_ARATH; NAC domain-containing protein 83
TrEMBLB9GMQ31e-176B9GMQ3_POPTR; No apical meristem family protein
STRINGPOPTR_0001s13380.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-109NAC domain containing protein 83